Molecule of the Month: Lenacapavir
A potent and long-acting drug that targets the HIV capsid
Discovering a drug that targets the capsid
Cracking the capsid
Exploring the Structure
The development of lenacapavir
Scientists at Gilead Sciences tested numerous compounds enroute to discovering lenacapavir. Take a closer look at a few of the compounds that were synthesized and structurally characterized that helped to optimize lenacapavir's chemical structure. Shown in the JSmol interactive are compound 6 (pdb_00009pgs), compound 12 (pdb_00009pgt), compound 24 (pdb_00009pgv), compound 40 (pdb_00009pgu), and lenacapavir (pdb_00006v2f).
Topics for Further Discussion
- Explore other HIV and AIDS-related content on PDB-101.
- Take a closer look at the structure of the HIV capsid and build a paper model.
- Take a look at an illustration of a cell infected with HIV.
- Watch an animation that describes how different classes of anti-retroviral therapies work.
Related PDB-101 Resources
- Browse HIV and AIDS
- Browse Viruses
- Browse Drug Action
- Browse Infectious Disease
References
- pdb_00006v2f: Link JO, Rhee MS, Tse WC, Zheng J, Somoza JR, Rowe W, Begley R, Chiu A, Mulato A, Hansen D, Singer E, Tsai LK, Bam RA, Chou CH, Canales E, Brizgys G, Zhang JR, Li J, Graupe M, Morganelli P, Liu Q, Wu Q, Halcomb RL, Saito RD, Schroeder SD, Lazerwith SE, Bondy S, Jin D, Hung M, Novikov N, Liu X, VillaseƱor AG, Cannizzaro CE, Hu EY, Anderson RL, Appleby TC, Lu B, Mwangi J, Liclican A, Niedziela-Majka A, Papalia GA, Wong MH, Leavitt SA, Xu Y, Koditek D, Stepan GJ, Yu H, Pagratis N, Clancy S, Ahmadyar S, Cai TZ, Sellers S, Wolckenhauer SA, Ling J, Callebaut C, Margot N, Ram RR, Liu YP, Hyland R, Sinclair GI, Ruane PJ, Crofoot GE, McDonald CK, Brainard DM, Lad L, Swaminathan S, Sundquist WI, Sakowicz R, Chester AE, Lee WE, Daar ES, Yant SR, Cihlar T. Clinical targeting of HIV capsid protein with a long-acting small molecule. Nature. 2020 Aug;584(7822):614-618.
- pdb_00009pry, pdb_00009y7j: Dos Santos NFB, Lewis JA, Hansen M, Pereira MJB, Christensen DE, Sundquist WI, Ganser-Pornillos BK, Pornillos O. Lenacapavir allosterically remodels the HIV-1 capsid. bioRxiv [Preprint]. 2026 Jan 5:2026.01.05.697065.
- pdb_00009pgs, pdb_00009pgt, pdb_00009pgu, pdb_00009pgv: Canales E, Tse W, Schroeder SD, Chou CH, Liu Q, Zhang J, Lazerwith SE, Morganelli P, Saito RD, Brizgys G, Li J, Wu Q, Graupe M, Halcomb RL, Desai M, Cannizzaro C, Hu E, Perry JK, VillaseƱor AG, Somoza JR, Ferrao RD, Swaminathan S, Zheng J, Lu B, Mwangi J, Wang K, Subramanian R, Smith BJ, Rhodes G, Rowe W, Sauer D, Lad L, Papalia GA, Clancy S, Stepan GJ, Yu H, Sakowicz R, Shi B, Carr G, Bam RA, Tsai LK, Singer E, Hansen D, Mulato A, Yant SR, Cihlar T, Link JO. Discovery of Lenacapavir: First-in-Class Twice-Yearly Capsid Inhibitor for HIV-1 Treatment and Pre-exposure Prophylaxis. J Med Chem. 2025 Oct 23;68(20):21072-21094.
- von Schwedler UK, Stray KM, Garrus JE, Sundquist WI. Functional surfaces of the human immunodeficiency virus type 1 capsid protein. J Virol. 2003 May;77(9):5439-50.
- Pornillos O, Ganser-Pornillos BK, Kelly BN, Hua Y, Whitby FG, Stout CD, Sundquist WI, Hill CP, Yeager M. X-ray structures of the hexameric building block of the HIV capsid. Cell. 2009 Jun 26;137(7):1282-92. doi: 10.1016/j.cell.2009.04.063. Epub 2009 Jun 11. PMID: 19523676; PMCID: PMC2840706.
- Bester SM, Wei G, Zhao H, Adu-Ampratwum D, Iqbal N, Courouble VV, Francis AC, Annamalai AS, Singh PK, Shkriabai N, Van Blerkom P, Morrison J, Poeschla EM, Engelman AN, Melikyan GB, Griffin PR, Fuchs JR, Asturias FJ, Kvaratskhelia M. Structural and mechanistic bases for a potent HIV-1 capsid inhibitor. Science. 2020 Oct 16;370(6514):360-364.
March 2026, Janet Iwasa
http://doi.org/10.2210/rcsb_pdb/mom_2026_3


